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Longitudinal multi-omics of host-microbe dynamics in prediabetes.

Identifieur interne : 000875 ( Main/Exploration ); précédent : 000874; suivant : 000876

Longitudinal multi-omics of host-microbe dynamics in prediabetes.

Auteurs : Wenyu Zhou [États-Unis] ; M Reza Sailani [États-Unis] ; Kévin Contrepois [États-Unis] ; Yanjiao Zhou [États-Unis] ; Sara Ahadi [États-Unis] ; Shana R. Leopold [États-Unis] ; Martin J. Zhang [États-Unis] ; Varsha Rao [États-Unis] ; Monika Avina [États-Unis] ; Tejaswini Mishra [États-Unis] ; Jethro Johnson [États-Unis] ; Brittany Lee-Mcmullen [États-Unis] ; Songjie Chen [États-Unis] ; Ahmed A. Metwally [États-Unis] ; Thi Dong Binh Tran [États-Unis] ; Hoan Nguyen [États-Unis] ; Xin Zhou [États-Unis] ; Brandon Albright [États-Unis] ; Bo-Young Hong [États-Unis] ; Lauren Petersen [États-Unis] ; Eddy Bautista [États-Unis] ; Blake Hanson [États-Unis] ; Lei Chen [États-Unis] ; Daniel Spakowicz [États-Unis] ; Amir Bahmani [États-Unis] ; Denis Salins [États-Unis] ; Benjamin Leopold [États-Unis] ; Melanie Ashland [États-Unis] ; Orit Dagan-Rosenfeld [États-Unis] ; Shannon Rego [États-Unis] ; Patricia Limcaoco [États-Unis] ; Elizabeth Colbert [États-Unis] ; Candice Allister [États-Unis] ; Dalia Perelman [États-Unis] ; Colleen Craig [États-Unis] ; Eric Wei [États-Unis] ; Hassan Chaib [États-Unis] ; Daniel Hornburg [États-Unis] ; Jessilyn Dunn [États-Unis] ; Liang Liang [États-Unis] ; Sophia Miryam Schüssler-Fiorenza Rose [États-Unis] ; Kim Kukurba [États-Unis] ; Brian Piening [États-Unis] ; Hannes Rost [Canada] ; David Tse [États-Unis] ; Tracey Mclaughlin [États-Unis] ; Erica Sodergren [États-Unis] ; George M. Weinstock [États-Unis] ; Michael Snyder [États-Unis]

Source :

RBID : pubmed:31142858

Descripteurs français

English descriptors

Abstract

Type 2 diabetes mellitus (T2D) is a growing health problem, but little is known about its early disease stages, its effects on biological processes or the transition to clinical T2D. To understand the earliest stages of T2D better, we obtained samples from 106 healthy individuals and individuals with prediabetes over approximately four years and performed deep profiling of transcriptomes, metabolomes, cytokines, and proteomes, as well as changes in the microbiome. This rich longitudinal data set revealed many insights: first, healthy profiles are distinct among individuals while displaying diverse patterns of intra- and/or inter-personal variability. Second, extensive host and microbial changes occur during respiratory viral infections and immunization, and immunization triggers potentially protective responses that are distinct from responses to respiratory viral infections. Moreover, during respiratory viral infections, insulin-resistant participants respond differently than insulin-sensitive participants. Third, global co-association analyses among the thousands of profiled molecules reveal specific host-microbe interactions that differ between insulin-resistant and insulin-sensitive individuals. Last, we identified early personal molecular signatures in one individual that preceded the onset of T2D, including the inflammation markers interleukin-1 receptor agonist (IL-1RA) and high-sensitivity C-reactive protein (CRP) paired with xenobiotic-induced immune signalling. Our study reveals insights into pathways and responses that differ between glucose-dysregulated and healthy individuals during health and disease and provides an open-access data resource to enable further research into healthy, prediabetic and T2D states.

DOI: 10.1038/s41586-019-1236-x
PubMed: 31142858


Affiliations:


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<name sortKey="Hornburg, Daniel" sort="Hornburg, Daniel" uniqKey="Hornburg D" first="Daniel" last="Hornburg">Daniel Hornburg</name>
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<region type="state">Californie</region>
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<name sortKey="Liang, Liang" sort="Liang, Liang" uniqKey="Liang L" first="Liang" last="Liang">Liang Liang</name>
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<nlm:affiliation>Department of Genetics, Stanford University School of Medicine, Stanford, CA, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Genetics, Stanford University School of Medicine, Stanford, CA</wicri:regionArea>
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<name sortKey="Rose, Sophia Miryam Schussler Fiorenza" sort="Rose, Sophia Miryam Schussler Fiorenza" uniqKey="Rose S" first="Sophia Miryam Schüssler-Fiorenza" last="Rose">Sophia Miryam Schüssler-Fiorenza Rose</name>
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<wicri:regionArea>Spinal Cord Injury Service, Veteran Affairs Palo Alto Health Care System, Palo Alto, CA</wicri:regionArea>
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<name sortKey="Rost, Hannes" sort="Rost, Hannes" uniqKey="Rost H" first="Hannes" last="Rost">Hannes Rost</name>
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<nlm:affiliation>Donnelly Centre for Cellular & Biomolecular Research, University of Toronto, Toronto, Ontario, Canada.</nlm:affiliation>
<country xml:lang="fr">Canada</country>
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<name sortKey="Tse, David" sort="Tse, David" uniqKey="Tse D" first="David" last="Tse">David Tse</name>
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<nlm:affiliation>Department of Electrical Engineering, Stanford University, Stanford, CA, USA.</nlm:affiliation>
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<wicri:regionArea>Department of Electrical Engineering, Stanford University, Stanford, CA</wicri:regionArea>
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<region type="state">Californie</region>
</placeName>
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</author>
<author>
<name sortKey="Mclaughlin, Tracey" sort="Mclaughlin, Tracey" uniqKey="Mclaughlin T" first="Tracey" last="Mclaughlin">Tracey Mclaughlin</name>
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<region type="state">Californie</region>
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<name sortKey="Sodergren, Erica" sort="Sodergren, Erica" uniqKey="Sodergren E" first="Erica" last="Sodergren">Erica Sodergren</name>
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<nlm:affiliation>The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA.</nlm:affiliation>
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<wicri:regionArea>The Jackson Laboratory for Genomic Medicine, Farmington, CT</wicri:regionArea>
<placeName>
<region type="state">Connecticut</region>
</placeName>
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</author>
<author>
<name sortKey="Weinstock, George M" sort="Weinstock, George M" uniqKey="Weinstock G" first="George M" last="Weinstock">George M. Weinstock</name>
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<nlm:affiliation>The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA. George.Weinstock@jax.org.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>The Jackson Laboratory for Genomic Medicine, Farmington, CT</wicri:regionArea>
<placeName>
<region type="state">Connecticut</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Snyder, Michael" sort="Snyder, Michael" uniqKey="Snyder M" first="Michael" last="Snyder">Michael Snyder</name>
<affiliation wicri:level="2">
<nlm:affiliation>Department of Genetics, Stanford University School of Medicine, Stanford, CA, USA. mpsnyder@stanford.edu.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Genetics, Stanford University School of Medicine, Stanford, CA</wicri:regionArea>
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</analytic>
<series>
<title level="j">Nature</title>
<idno type="eISSN">1476-4687</idno>
<imprint>
<date when="2019" type="published">2019</date>
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<term>Biomarkers (metabolism)</term>
<term>Cohort Studies</term>
<term>Computational Biology</term>
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<term>Diabète de type 2 (microbiologie)</term>
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<term>Diabetes Mellitus, Type 2</term>
<term>Inflammation</term>
<term>Prediabetic State</term>
<term>Respiratory Tract Infections</term>
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<term>Diabète de type 2</term>
<term>Infections de l'appareil respiratoire</term>
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<term>Infections de l'appareil respiratoire</term>
</keywords>
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<term>Respiratory Tract Infections</term>
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<term>Adult</term>
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<term>Gastrointestinal Microbiome</term>
<term>Healthy Volunteers</term>
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<term>Insulin Resistance</term>
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<front>
<div type="abstract" xml:lang="en">Type 2 diabetes mellitus (T2D) is a growing health problem, but little is known about its early disease stages, its effects on biological processes or the transition to clinical T2D. To understand the earliest stages of T2D better, we obtained samples from 106 healthy individuals and individuals with prediabetes over approximately four years and performed deep profiling of transcriptomes, metabolomes, cytokines, and proteomes, as well as changes in the microbiome. This rich longitudinal data set revealed many insights: first, healthy profiles are distinct among individuals while displaying diverse patterns of intra- and/or inter-personal variability. Second, extensive host and microbial changes occur during respiratory viral infections and immunization, and immunization triggers potentially protective responses that are distinct from responses to respiratory viral infections. Moreover, during respiratory viral infections, insulin-resistant participants respond differently than insulin-sensitive participants. Third, global co-association analyses among the thousands of profiled molecules reveal specific host-microbe interactions that differ between insulin-resistant and insulin-sensitive individuals. Last, we identified early personal molecular signatures in one individual that preceded the onset of T2D, including the inflammation markers interleukin-1 receptor agonist (IL-1RA) and high-sensitivity C-reactive protein (CRP) paired with xenobiotic-induced immune signalling. Our study reveals insights into pathways and responses that differ between glucose-dysregulated and healthy individuals during health and disease and provides an open-access data resource to enable further research into healthy, prediabetic and T2D states.</div>
</front>
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<name sortKey="Nguyen, Hoan" sort="Nguyen, Hoan" uniqKey="Nguyen H" first="Hoan" last="Nguyen">Hoan Nguyen</name>
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<name sortKey="Petersen, Lauren" sort="Petersen, Lauren" uniqKey="Petersen L" first="Lauren" last="Petersen">Lauren Petersen</name>
<name sortKey="Piening, Brian" sort="Piening, Brian" uniqKey="Piening B" first="Brian" last="Piening">Brian Piening</name>
<name sortKey="Rao, Varsha" sort="Rao, Varsha" uniqKey="Rao V" first="Varsha" last="Rao">Varsha Rao</name>
<name sortKey="Rego, Shannon" sort="Rego, Shannon" uniqKey="Rego S" first="Shannon" last="Rego">Shannon Rego</name>
<name sortKey="Rose, Sophia Miryam Schussler Fiorenza" sort="Rose, Sophia Miryam Schussler Fiorenza" uniqKey="Rose S" first="Sophia Miryam Schüssler-Fiorenza" last="Rose">Sophia Miryam Schüssler-Fiorenza Rose</name>
<name sortKey="Sailani, M Reza" sort="Sailani, M Reza" uniqKey="Sailani M" first="M Reza" last="Sailani">M Reza Sailani</name>
<name sortKey="Salins, Denis" sort="Salins, Denis" uniqKey="Salins D" first="Denis" last="Salins">Denis Salins</name>
<name sortKey="Snyder, Michael" sort="Snyder, Michael" uniqKey="Snyder M" first="Michael" last="Snyder">Michael Snyder</name>
<name sortKey="Sodergren, Erica" sort="Sodergren, Erica" uniqKey="Sodergren E" first="Erica" last="Sodergren">Erica Sodergren</name>
<name sortKey="Spakowicz, Daniel" sort="Spakowicz, Daniel" uniqKey="Spakowicz D" first="Daniel" last="Spakowicz">Daniel Spakowicz</name>
<name sortKey="Tran, Thi Dong Binh" sort="Tran, Thi Dong Binh" uniqKey="Tran T" first="Thi Dong Binh" last="Tran">Thi Dong Binh Tran</name>
<name sortKey="Tse, David" sort="Tse, David" uniqKey="Tse D" first="David" last="Tse">David Tse</name>
<name sortKey="Wei, Eric" sort="Wei, Eric" uniqKey="Wei E" first="Eric" last="Wei">Eric Wei</name>
<name sortKey="Weinstock, George M" sort="Weinstock, George M" uniqKey="Weinstock G" first="George M" last="Weinstock">George M. Weinstock</name>
<name sortKey="Zhang, Martin J" sort="Zhang, Martin J" uniqKey="Zhang M" first="Martin J" last="Zhang">Martin J. Zhang</name>
<name sortKey="Zhou, Xin" sort="Zhou, Xin" uniqKey="Zhou X" first="Xin" last="Zhou">Xin Zhou</name>
<name sortKey="Zhou, Yanjiao" sort="Zhou, Yanjiao" uniqKey="Zhou Y" first="Yanjiao" last="Zhou">Yanjiao Zhou</name>
</country>
<country name="Canada">
<region name="Ontario">
<name sortKey="Rost, Hannes" sort="Rost, Hannes" uniqKey="Rost H" first="Hannes" last="Rost">Hannes Rost</name>
</region>
</country>
</tree>
</affiliations>
</record>

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